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Notes on Computational Genomics with R
About the author
Questions and Issues
Edit and Contribute
Introduction
1.
Computational Genomics and R
1.1.
What can you do with R ?
2.
Quick Introduction to R
2.1.
The Setup
2.2.
Computations in R
2.3.
Data structures and types
2.4.
Reading and writing data
2.5.
Plotting in R
2.6.
Functions and control structures (for, if/else etc.)
3.
Genomic Intervals
3.1.
Operations on Genomic Intervals with GenomicRanges package
3.2.
Dealing with highthroughput sequencing reads
3.3.
Dealing with contiguous scores over the genome
4.
Sequence analysis
5.
Visualization
Visualization